Event History Analysis with R

Author: Göran Broström

Publisher: CRC Press

ISBN: 149878660X

Category: Mathematics

Page: 236

View: 7706

With an emphasis on social science applications, Event History Analysis with R presents an introduction to survival and event history analysis using real-life examples. Keeping mathematical details to a minimum, the book covers key topics, including both discrete and continuous time data, parametric proportional hazards, and accelerated failure times. Features Introduces parametric proportional hazards models with baseline distributions like the Weibull, Gompertz, Lognormal, and Piecewise constant hazard distributions, in addition to traditional Cox regression Presents mathematical details as well as technical material in an appendix Includes real examples with applications in demography, econometrics, and epidemiology Provides a dedicated R package, eha, containing special treatments, including making cuts in the Lexis diagram, creating communal covariates, and creating period statistics A much-needed primer, Event History Analysis with R is a didactically excellent resource for students and practitioners of applied event history and survival analysis.

Introducing Survival and Event History Analysis

Author: Melinda Mills

Publisher: SAGE Publications

ISBN: 1848601026

Category: Social Science

Page: 279

View: 8863

This book is an accessible, practical and comprehensive guide for researchers from multiple disciplines including biomedical, epidemiology, engineering and the social sciences. Written for accessibility, this book will appeal to students and researchers who want to understand the basics of survival and event history analysis and apply these methods without getting entangled in mathematical and theoretical technicalities. Inside, readers are offered a blueprint for their entire research project from data preparation to model selection and diagnostics. Engaging, easy to read, functional and packed with enlightening examples, ‘hands-on’ exercises, conversations with key scholars and resources for both students and instructors, this text allows researchers to quickly master advanced statistical techniques. It is written from the perspective of the ‘user’, making it suitable as both a self-learning tool and graduate-level textbook. Also included are up-to-date innovations in the field, including advancements in the assessment of model fit, unobserved heterogeneity, recurrent events and multilevel event history models. Practical instructions are also included for using the statistical programs of R, STATA and SPSS, enabling readers to replicate the examples described in the text.

Competing Risks and Multistate Models with R

Author: Jan Beyersmann,Arthur Allignol,Martin Schumacher

Publisher: Springer Science & Business Media

ISBN: 1461420350

Category: Mathematics

Page: 245

View: 6682

This book covers competing risks and multistate models, sometimes summarized as event history analysis. These models generalize the analysis of time to a single event (survival analysis) to analysing the timing of distinct terminal events (competing risks) and possible intermediate events (multistate models). Both R and multistate methods are promoted with a focus on nonparametric methods.

The R Book

Author: Michael J. Crawley

Publisher: John Wiley & Sons

ISBN: 1118448960

Category: Mathematics

Page: 1080

View: 7324

Hugely successful and popular text presenting an extensive and comprehensive guide for all R users The R language is recognized as one of the most powerful and flexible statistical software packages, enabling users to apply many statistical techniques that would be impossible without such software to help implement such large data sets. R has become an essential tool for understanding and carrying out research. This edition: Features full colour text and extensive graphics throughout. Introduces a clear structure with numbered section headings to help readers locate information more efficiently. Looks at the evolution of R over the past five years. Features a new chapter on Bayesian Analysis and Meta-Analysis. Presents a fully revised and updated bibliography and reference section. Is supported by an accompanying website allowing examples from the text to be run by the user. Praise for the first edition: ‘…if you are an R user or wannabe R user, this text is the one that should be on your shelf. The breadth of topics covered is unsurpassed when it comes to texts on data analysis in R.’ (The American Statistician, August 2008) ‘The High-level software language of R is setting standards in quantitative analysis. And now anybody can get to grips with it thanks to The R Book…’ (Professional Pensions, July 2007)

Survival and Event History Analysis

A Process Point of View

Author: Odd Aalen,Ornulf Borgan,Hakon Gjessing

Publisher: Springer Science & Business Media

ISBN: 038768560X

Category: Mathematics

Page: 540

View: 587

The aim of this book is to bridge the gap between standard textbook models and a range of models where the dynamic structure of the data manifests itself fully. The common denominator of such models is stochastic processes. The authors show how counting processes, martingales, and stochastic integrals fit very nicely with censored data. Beginning with standard analyses such as Kaplan-Meier plots and Cox regression, the presentation progresses to the additive hazard model and recurrent event data. Stochastic processes are also used as natural models for individual frailty; they allow sensible interpretations of a number of surprising artifacts seen in population data. The stochastic process framework is naturally connected to causality. The authors show how dynamic path analyses can incorporate many modern causality ideas in a framework that takes the time aspect seriously. To make the material accessible to the reader, a large number of practical examples, mainly from medicine, are developed in detail. Stochastic processes are introduced in an intuitive and non-technical manner. The book is aimed at investigators who use event history methods and want a better understanding of the statistical concepts. It is suitable as a textbook for graduate courses in statistics and biostatistics.

Multistate Analysis of Life Histories with R

Author: Frans Willekens

Publisher: Springer

ISBN: 331908383X

Category: Mathematics

Page: 308

View: 9410

This book provides an introduction to multistate event history analysis. It is an extension of survival analysis, in which a single terminal event (endpoint) is considered and the time-to-event is studied. Multistate models focus on life histories or trajectories, conceptualized as sequences of states and sequences of transitions between states. Life histories are modeled as realizations of continuous-time Markov processes. The model parameters, transition rates, are estimated from data on event counts and populations at risk, using the statistical theory of counting processes. The Comprehensive R Network Archive (CRAN) includes several packages for multistate modeling. This book is about Biograph. The package is designed to (a) enhance exploratory analysis of life histories and (b) make multistate modeling accessible. The package incorporates utilities that connect to several packages for multistate modeling, including survival, eha, Epi, mvna,, mstate, msm, and TraMineR for sequence analysis. The book is a ‘hands-on’ presentation of Biograph and the packages listed. It is written from the perspective of the user. To help the user master the techniques and the software, a single data set is used to illustrate the methods and software. It is the subsample of the German Life History Survey, which was also used by Blossfeld and Rohwer in their popular textbook on event history modeling. Another data set, the Netherlands Family and Fertility Survey, is used to illustrate how Biograph can assist in answering questions on life paths of cohorts and individuals. The book is suitable as a textbook for graduate courses on event history analysis and introductory courses on competing risks and multistate models. It may also be used as a self-study book. The R code used in the book is available online. Frans Willekens is affiliated with the Max Planck Institute for Demographic Research (MPIDR) in Rostock, Germany. He is Emeritus Professor of Demography at the University of Groningen, a Honorary Fellow of the Netherlands Interdisciplinary Demographic Institute (NIDI) in the Hague, and a Research Associate of the International Institute for Applied Systems Analysis (IIASA), Laxenburg, Austria. He is a member of Royal Netherlands Academy of Arts and Sciences (KNAW). He has contributed to the modeling and simulation of life histories, mainly in the context of population forecasting.

Multistate Models for the Analysis of Life History Data

Author: Richard J Cook,Jerald F. Lawless

Publisher: CRC Press

ISBN: 1351646052

Category: Mathematics

Page: 440

View: 5017

Multistate Models for the Analysis of Life History Data provides the first comprehensive treatment of multistate modeling and analysis, including parametric, nonparametric and semiparametric methods applicable to many types of life history data. Special models such as illness-death, competing risks and progressive processes are considered, as well as more complex models. The book provides both theoretical development and illustrations of analysis based on data from randomized trials and observational cohort studies in health research. Features Discusses a wide range of applications of multistate models Presents methods for both continuously and intermittently observed life history processes Gives a thorough discussion of conditionally independent censoring and observation processes Discusses models with random effects and joint models for two or more multistate processes Discusses and illustrates software for multistate analysis that is available in R Target audience includes those engaged in research and applications involving multistate models Richard Cook is Canada Research Chair in Statistical Methods for Health Research at the University of Waterloo. He has received the Gold Medal of the Statistical Society of Canada and is a Fellow of the American Statistical Association. He collaborates and consults widely on health research and has given many short courses. He and Dr. Lawless previously coauthored the influential book, The Statistical Analysis of Recurrent Events (Springer, 2007). Jerald Lawless is Distinguished Professor Emeritus at the University of Waterloo. He is a Fellow of the Royal Society of Canada, a Gold Medal recipient of the Statistical Society of Canada and Fellow of the American Statistical Association. He is a past editor of Technometrics and has collaborated and consulted in numerous areas. He has presented many short courses, with Dr. Cook and individually. "The authors of the book are internationally renowned experts in the field of multi-state modeling and have written an extremely clear and comprehensive book on the topic that covers many different aspects, from the fundamental theory to the practical side of analyzing data and interpreting results. The examples are well chosen to represent the most common types of multi-state processes that public health researchers could encounter. The inclusion of software code to illustrate how the models can be fit and interpreted is especially helpful to readers." (Mimi Kim, Albert Einstein College of Medicine)

Applied Survival Analysis Using R

Author: Dirk F. Moore

Publisher: Springer

ISBN: 3319312456

Category: Medical

Page: 226

View: 1652

Applied Survival Analysis Using R covers the main principles of survival analysis, gives examples of how it is applied, and teaches how to put those principles to use to analyze data using R as a vehicle. Survival data, where the primary outcome is time to a specific event, arise in many areas of biomedical research, including clinical trials, epidemiological studies, and studies of animals. Many survival methods are extensions of techniques used in linear regression and categorical data, while other aspects of this field are unique to survival data. This text employs numerous actual examples to illustrate survival curve estimation, comparison of survivals of different groups, proper accounting for censoring and truncation, model variable selection, and residual analysis. Because explaining survival analysis requires more advanced mathematics than many other statistical topics, this book is organized with basic concepts and most frequently used procedures covered in earlier chapters, with more advanced topics near the end and in the appendices. A background in basic linear regression and categorical data analysis, as well as a basic knowledge of calculus and the R system, will help the reader to fully appreciate the information presented. Examples are simple and straightforward while still illustrating key points, shedding light on the application of survival analysis in a way that is useful for graduate students, researchers, and practitioners in biostatistics.

Applied Survival Analysis

Regression Modeling of Time to Event Data

Author: David W. Hosmer, Jr.,Stanley Lemeshow,Susanne May

Publisher: John Wiley & Sons

ISBN: 1118211588

Category: Mathematics

Page: 416

View: 5618

THE MOST PRACTICAL, UP-TO-DATE GUIDE TO MODELLING AND ANALYZING TIME-TO-EVENT DATA—NOW IN A VALUABLE NEW EDITION Since publication of the first edition nearly a decade ago, analyses using time-to-event methods have increase considerably in all areas of scientific inquiry mainly as a result of model-building methods available in modern statistical software packages. However, there has been minimal coverage in the available literature to9 guide researchers, practitioners, and students who wish to apply these methods to health-related areas of study. Applied Survival Analysis, Second Edition provides a comprehensive and up-to-date introduction to regression modeling for time-to-event data in medical, epidemiological, biostatistical, and other health-related research. This book places a unique emphasis on the practical and contemporary applications of regression modeling rather than the mathematical theory. It offers a clear and accessible presentation of modern modeling techniques supplemented with real-world examples and case studies. Key topics covered include: variable selection, identification of the scale of continuous covariates, the role of interactions in the model, assessment of fit and model assumptions, regression diagnostics, recurrent event models, frailty models, additive models, competing risk models, and missing data. Features of the Second Edition include: Expanded coverage of interactions and the covariate-adjusted survival functions The use of the Worchester Heart Attack Study as the main modeling data set for illustrating discussed concepts and techniques New discussion of variable selection with multivariable fractional polynomials Further exploration of time-varying covariates, complex with examples Additional treatment of the exponential, Weibull, and log-logistic parametric regression models Increased emphasis on interpreting and using results as well as utilizing multiple imputation methods to analyze data with missing values New examples and exercises at the end of each chapter Analyses throughout the text are performed using Stata® Version 9, and an accompanying FTP site contains the data sets used in the book. Applied Survival Analysis, Second Edition is an ideal book for graduate-level courses in biostatistics, statistics, and epidemiologic methods. It also serves as a valuable reference for practitioners and researchers in any health-related field or for professionals in insurance and government.

Time Series Analysis and Its Applications

With R Examples

Author: Robert H. Shumway,David S. Stoffer

Publisher: Springer

ISBN: 3319524526

Category: Mathematics

Page: 562

View: 5394

The fourth edition of this popular graduate textbook, like its predecessors, presents a balanced and comprehensive treatment of both time and frequency domain methods with accompanying theory. Numerous examples using nontrivial data illustrate solutions to problems such as discovering natural and anthropogenic climate change, evaluating pain perception experiments using functional magnetic resonance imaging, and monitoring a nuclear test ban treaty. The book is designed as a textbook for graduate level students in the physical, biological, and social sciences and as a graduate level text in statistics. Some parts may also serve as an undergraduate introductory course. Theory and methodology are separated to allow presentations on different levels. In addition to coverage of classical methods of time series regression, ARIMA models, spectral analysis and state-space models, the text includes modern developments including categorical time series analysis, multivariate spectral methods, long memory series, nonlinear models, resampling techniques, GARCH models, ARMAX models, stochastic volatility, wavelets, and Markov chain Monte Carlo integration methods. This edition includes R code for each numerical example in addition to Appendix R, which provides a reference for the data sets and R scripts used in the text in addition to a tutorial on basic R commands and R time series. An additional file is available on the book’s website for download, making all the data sets and scripts easy to load into R.

Joint Models for Longitudinal and Time-to-Event Data

With Applications in R

Author: Dimitris Rizopoulos

Publisher: CRC Press

ISBN: 1439872864

Category: Mathematics

Page: 275

View: 5482

In longitudinal studies it is often of interest to investigate how a marker that is repeatedly measured in time is associated with a time to an event of interest, e.g., prostate cancer studies where longitudinal PSA level measurements are collected in conjunction with the time-to-recurrence. Joint Models for Longitudinal and Time-to-Event Data: With Applications in R provides a full treatment of random effects joint models for longitudinal and time-to-event outcomes that can be utilized to analyze such data. The content is primarily explanatory, focusing on applications of joint modeling, but sufficient mathematical details are provided to facilitate understanding of the key features of these models. All illustrations put forward can be implemented in the R programming language via the freely available package JM written by the author. All the R code used in the book is available at: http://jmr.r-forge.r-project.org/

Handbook of Data Analysis

Author: Melissa A Hardy,Alan Bryman

Publisher: SAGE Publications

ISBN: 1446242897

Category: Reference

Page: 728

View: 383

A fundamental book for social researchers. It provides a first-class, reliable guide to the basic issues in data analysis. Scholars and students can turn to it for teaching and applied needs with confidence.

Applied Meta-Analysis with R

Author: Ding-Geng (Din) Chen,Karl E. Peace

Publisher: CRC Press

ISBN: 1466505990

Category: Mathematics

Page: 342

View: 9697

In biostatistical research and courses, practitioners and students often lack a thorough understanding of how to apply statistical methods to synthesize biomedical and clinical trial data. Filling this knowledge gap, Applied Meta-Analysis with R shows how to implement statistical meta-analysis methods to real data using R. Drawing on their extensive research and teaching experiences, the authors provide detailed, step-by-step explanations of the implementation of meta-analysis methods using R. Each chapter gives examples of real studies compiled from the literature. After presenting the data and necessary background for understanding the applications, various methods for analyzing meta-data are introduced. The authors then develop analysis code using the appropriate R packages and functions. This systematic approach helps readers thoroughly understand the analysis methods and R implementation, enabling them to use R and the methods to analyze their own meta-data. Suitable as a graduate-level text for a meta-data analysis course, the book is also a valuable reference for practitioners and biostatisticians (even those with little or no experience in using R) in public health, medical research, governmental agencies, and the pharmaceutical industry.

Growth Curve Analysis and Visualization Using R

Author: Daniel Mirman

Publisher: CRC Press

ISBN: 1315360330

Category: Mathematics

Page: 188

View: 9218

Learn How to Use Growth Curve Analysis with Your Time Course Data An increasingly prominent statistical tool in the behavioral sciences, multilevel regression offers a statistical framework for analyzing longitudinal or time course data. It also provides a way to quantify and analyze individual differences, such as developmental and neuropsychological, in the context of a model of the overall group effects. To harness the practical aspects of this useful tool, behavioral science researchers need a concise, accessible resource that explains how to implement these analysis methods. Growth Curve Analysis and Visualization Using R provides a practical, easy-to-understand guide to carrying out multilevel regression/growth curve analysis (GCA) of time course or longitudinal data in the behavioral sciences, particularly cognitive science, cognitive neuroscience, and psychology. With a minimum of statistical theory and technical jargon, the author focuses on the concrete issue of applying GCA to behavioral science data and individual differences. The book begins with discussing problems encountered when analyzing time course data, how to visualize time course data using the ggplot2 package, and how to format data for GCA and plotting. It then presents a conceptual overview of GCA and the core analysis syntax using the lme4 package and demonstrates how to plot model fits. The book describes how to deal with change over time that is not linear, how to structure random effects, how GCA and regression use categorical predictors, and how to conduct multiple simultaneous comparisons among different levels of a factor. It also compares the advantages and disadvantages of approaches to implementing logistic and quasi-logistic GCA and discusses how to use GCA to analyze individual differences as both fixed and random effects. The final chapter presents the code for all of the key examples along with samples demonstrating how to report GCA results. Throughout the book, R code illustrates how to implement the analyses and generate the graphs. Each chapter ends with exercises to test your understanding. The example datasets, code for solutions to the exercises, and supplemental code and examples are available on the author’s website.

Graphical Data Analysis with R

Author: Antony Unwin

Publisher: CRC Press

ISBN: 1498786774

Category: Mathematics

Page: 310

View: 6496

See How Graphics Reveal Information Graphical Data Analysis with R shows you what information you can gain from graphical displays. The book focuses on why you draw graphics to display data and which graphics to draw (and uses R to do so). All the datasets are available in R or one of its packages and the R code is available at rosuda.org/GDA. Graphical data analysis is useful for data cleaning, exploring data structure, detecting outliers and unusual groups, identifying trends and clusters, spotting local patterns, evaluating modelling output, and presenting results. This book guides you in choosing graphics and understanding what information you can glean from them. It can be used as a primary text in a graphical data analysis course or as a supplement in a statistics course. Colour graphics are used throughout.

Applied Longitudinal Data Analysis

Modeling Change and Event Occurrence

Author: Judith D. Singer,John B. Willett

Publisher: Oxford University Press

ISBN: 0199882401

Category: Psychology

Page: 644

View: 1003

Change is constant in everyday life. Infants crawl and then walk, children learn to read and write, teenagers mature in myriad ways, the elderly become frail and forgetful. Beyond these natural processes and events, external forces and interventions instigate and disrupt change: test scores may rise after a coaching course, drug abusers may remain abstinent after residential treatment. By charting changes over time and investigating whether and when events occur, researchers reveal the temporal rhythms of our lives. Applied Longitudinal Data Analysis is a much-needed professional book for empirical researchers and graduate students in the behavioral, social, and biomedical sciences. It offers the first accessible in-depth presentation of two of today's most popular statistical methods: multilevel models for individual change and hazard/survival models for event occurrence (in both discrete- and continuous-time). Using clear, concise prose and real data sets from published studies, the authors take you step by step through complete analyses, from simple exploratory displays that reveal underlying patterns through sophisticated specifications of complex statistical models. Applied Longitudinal Data Analysis offers readers a private consultation session with internationally recognized experts and represents a unique contribution to the literature on quantitative empirical methods. Visit http://www.ats.ucla.edu/stat/examples/alda.htm for: · Downloadable data sets · Library of computer programs in SAS, SPSS, Stata, HLM, MLwiN, and more · Additional material for data analysis

Introduction to Data Science for Social and Policy Research

Author: Jose Manuel Magallanes Reyes

Publisher: Cambridge University Press

ISBN: 1107117410

Category: Social Science

Page: 250

View: 9422

Real-world data sets are messy and complicated. Written for students in social science and public management, this authoritative but approachable guide describes all the tools needed to collect data and prepare it for analysis. Offering detailed, step-by-step instructions, it covers collection of many different types of data including web files, APIs, and maps; data cleaning; data formatting; the integration of different sources into a comprehensive data set; and storage using third-party tools to facilitate access and shareability, from Google Docs to GitHub. Assuming no prior knowledge of R and Python, the author introduces programming concepts gradually, using real data sets that provide the reader with practical, functional experience.

Multivariate Survival Analysis and Competing Risks

Author: Martin J. Crowder

Publisher: CRC Press

ISBN: 1439875227

Category: Mathematics

Page: 418

View: 7108

Multivariate Survival Analysis and Competing Risks introduces univariate survival analysis and extends it to the multivariate case. It covers competing risks and counting processes and provides many real-world examples, exercises, and R code. The text discusses survival data, survival distributions, frailty models, parametric methods, multivariate data and distributions, copulas, continuous failure, parametric likelihood inference, and non- and semi-parametric methods. There are many books covering survival analysis, but very few that cover the multivariate case in any depth. Written for a graduate-level audience in statistics/biostatistics, this book includes practical exercises and R code for the examples. The author is renowned for his clear writing style, and this book continues that trend. It is an excellent reference for graduate students and researchers looking for grounding in this burgeoning field of research.

Applied Spatial Data Analysis with R

Author: Roger S. Bivand,Edzer Pebesma,Virgilio Gómez-Rubio

Publisher: Springer Science & Business Media

ISBN: 1461476186

Category: Medical

Page: 405

View: 462

Applied Spatial Data Analysis with R, second edition, is divided into two basic parts, the first presenting R packages, functions, classes and methods for handling spatial data. This part is of interest to users who need to access and visualise spatial data. Data import and export for many file formats for spatial data are covered in detail, as is the interface between R and the open source GRASS GIS and the handling of spatio-temporal data. The second part showcases more specialised kinds of spatial data analysis, including spatial point pattern analysis, interpolation and geostatistics, areal data analysis and disease mapping. The coverage of methods of spatial data analysis ranges from standard techniques to new developments, and the examples used are largely taken from the spatial statistics literature. All the examples can be run using R contributed packages available from the CRAN website, with code and additional data sets from the book's own website. Compared to the first edition, the second edition covers the more systematic approach towards handling spatial data in R, as well as a number of important and widely used CRAN packages that have appeared since the first edition. This book will be of interest to researchers who intend to use R to handle, visualise, and analyse spatial data. It will also be of interest to spatial data analysts who do not use R, but who are interested in practical aspects of implementing software for spatial data analysis. It is a suitable companion book for introductory spatial statistics courses and for applied methods courses in a wide range of subjects using spatial data, including human and physical geography, geographical information science and geoinformatics, the environmental sciences, ecology, public health and disease control, economics, public administration and political science. The book has a website where complete code examples, data sets, and other support material may be found: http://www.asdar-book.org. The authors have taken part in writing and maintaining software for spatial data handling and analysis with R in concert since 2003.

Frailty Models in Survival Analysis

Author: Andreas Wienke

Publisher: CRC Press

ISBN: 9781420073911

Category: Mathematics

Page: 324

View: 8059

The concept of frailty offers a convenient way to introduce unobserved heterogeneity and associations into models for survival data. In its simplest form, frailty is an unobserved random proportionality factor that modifies the hazard function of an individual or a group of related individuals. Frailty Models in Survival Analysis presents a comprehensive overview of the fundamental approaches in the area of frailty models. The book extensively explores how univariate frailty models can represent unobserved heterogeneity. It also emphasizes correlated frailty models as extensions of univariate and shared frailty models. The author analyzes similarities and differences between frailty and copula models; discusses problems related to frailty models, such as tests for homogeneity; and describes parametric and semiparametric models using both frequentist and Bayesian approaches. He also shows how to apply the models to real data using the statistical packages of R, SAS, and Stata. The appendix provides the technical mathematical results used throughout. Written in nontechnical terms accessible to nonspecialists, this book explains the basic ideas in frailty modeling and statistical techniques, with a focus on real-world data application and interpretation of the results. By applying several models to the same data, it allows for the comparison of their advantages and limitations under varying model assumptions. The book also employs simulations to analyze the finite sample size performance of the models.